Index

Symbols

--allow_accumulate python--m-zea.data.convert-verasonics command line option --batch python--m-zea.data.convert-echonetlvh command line option --config zea command line option --convert_images python--m-zea.data.convert-echonetlvh command line option --convert_measurements python--m-zea.data.convert-echonetlvh command line option --device python--m-zea.data.convert-verasonics command line option --download python--m-zea.data.convert-camus command line option python--m-zea.data.convert-cetus command line option --force python--m-zea.data.convert-echonetlvh command line option --frames python--m-zea.data.convert-verasonics command line option python--m-zea.data.file_operations-extract command line option --help python--m-zea.data command line option python--m-zea.data.convert command line option python--m-zea.data.convert-camus command line option python--m-zea.data.convert-cetus command line option python--m-zea.data.convert-echonet command line option python--m-zea.data.convert-echonetlvh command line option python--m-zea.data.convert-picmus command line option python--m-zea.data.convert-verasonics command line option python--m-zea.data.file_operations command line option python--m-zea.data.file_operations-compound_frames command line option python--m-zea.data.file_operations-compound_transmits command line option python--m-zea.data.file_operations-extract command line option python--m-zea.data.file_operations-resave command line option python--m-zea.data.file_operations-sum command line option zea command line option --max_files python--m-zea.data.convert-echonetlvh command line option --mode python--m-zea.data command line option --no_compression python--m-zea.data.convert-verasonics command line option --no_hyperthreading python--m-zea.data.convert-camus command line option python--m-zea.data.convert-cetus command line option python--m-zea.data.convert-echonet command line option

--no_rejection python--m-zea.data.convert-echonetlvh command line option --overwrite python--m-zea.data.file_operations-compound_frames command line option python--m-zea.data.file_operations-compound_transmits command line option python--m-zea.data.file_operations-extract command line option python--m-zea.data.file_operations-resave command line option python--m-zea.data.file_operations-sum command line option --rejection_path python--m-zea.data.convert-echonetlvh command line option --skip_validate_file zea command line option --split_path python--m-zea.data.convert-echonet command line option --task zea command line option --transmits python--m-zea.data.file_operations-extract command line option --upload python--m-zea.data.convert-cetus command line option -c zea command line option -h python--m-zea.data command line option python--m-zea.data.convert command line option python--m-zea.data.convert-camus command line option python--m-zea.data.convert-cetus command line option python--m-zea.data.convert-echonet command line option python--m-zea.data.convert-echonetlvh command line option python--m-zea.data.convert-picmus command line option python--m-zea.data.convert-verasonics command line option python--m-zea.data.file_operations command line option python--m-zea.data.file_operations-compound_frames command line option python--m-zea.data.file_operations-compound_transmits command line option python--m-zea.data.file_operations-extract command line option python--m-zea.data.file_operations-resave command line option python--m-zea.data.file_operations-sum command line option zea command line option -t zea command line option

_

__call__() (zea.agent.gumbel.SubsetOperator method) (zea.data.convert.echonet.H5Processor method) (zea.data.convert.echonetlvh.LVHProcessor method) (zea.data.datasets.Dataset method) (zea.data.layers.Pad method) (zea.metrics.Metrics method) (zea.models.diffusion.DDS method) (zea.models.diffusion.DiffusionGuidance method) (zea.models.diffusion.DPS method) (zea.ops.Operation method) (zea.ops.Pipeline method) (zea.utils.FunctionTimer method)

A

Abs (class in zea.ops.keras_ops) Absolute (class in zea.ops.keras_ops) accept_shape() (in module zea.data.convert.echonet) Acg() (zea.models.diffusion.DDS method) adam() (in module zea.backend.optimizer) ADD_OUTPUT_KEYS (zea.ops.Demodulate attribute) (zea.ops.Downsample attribute) (zea.ops.Normalize attribute) (zea.ops.Operation attribute) (zea.ops.ScanConvert attribute) (zea.ops.Simulate attribute) add_salt_and_pepper_noise() (in module zea.func) AffineTransform (class in zea.ops.keras_ops) All (class in zea.ops.keras_ops) Amax (class in zea.ops.keras_ops) Amin (class in zea.ops.keras_ops) Angle (class in zea.ops.keras_ops) AnisotropicDiffusion (class in zea.ops) antirect() (in module zea.backend.tensorflow.layers.utils) Any (class in zea.ops.keras_ops) aperture_size (zea.scan.Scan property) append() (zea.ops.Pipeline method) append_to_yaml() (zea.utils.FunctionTimer method) apply() (zea.agent.selection.MaskActionModel method) apply_along_axis() (in module zea.func)

apply_delays() (in module zea.beamform.beamformer) ApplyWindow (class in zea.ops) Arccos (class in zea.ops.keras_ops) Arccosh (class in zea.ops.keras_ops) Arcsin (class in zea.ops.keras_ops) Arcsinh (class in zea.ops.keras_ops) Arctan (class in zea.ops.keras_ops) Arctanh (class in zea.ops.keras_ops) Argmax (class in zea.ops.keras_ops) Argmin (class in zea.ops.keras_ops) Argpartition (class in zea.ops.keras_ops) Argsort (class in zea.ops.keras_ops) Array (class in zea.ops.keras_ops) as_dict() (zea.config.Config method) ask_for_num_selections() (in module zea.tools.selection_tool) ask_for_selection_tool() (in module zea.tools.selection_tool) ask_for_title() (in module zea.tools.selection_tool) ask_save_animation_with_fps() (in module zea.tools.selection_tool) assert_key() (in module zea.data.file) attenuate() (in module zea.simulator) AugmentedCamusSeg (class in zea.models.lv_segmentation) AutoGrad (class in zea.backend.autograd) Average (class in zea.ops.keras_ops) azimuth_angles (zea.scan.Scan property) azimuth_limits (zea.scan.Scan property)

B

backend (zea.backend.autograd.AutoGrad property) BandPassFilter (class in zea.ops) bandwidth_percent (zea.data.convert.verasonics.VerasonicsFile property) Bartlett (class in zea.ops.keras_ops) BaseModel (class in zea.models.base) BaseTracker (class in zea.tracking) batch_cov() (in module zea.func) BatchNormalization (class in zea.ops.keras_ops) Beamform (class in zea.ops) Bincount (class in zea.ops.keras_ops) BitwiseAnd (class in zea.ops.keras_ops) BitwiseInvert (class in zea.ops.keras_ops) BitwiseLeftShift (class in zea.ops.keras_ops) BitwiseNot (class in zea.ops.keras_ops)

BitwiseOr (class in zea.ops.keras_ops) BitwiseRightShift (class in zea.ops.keras_ops) BitwiseXor (class in zea.ops.keras_ops) Blackman (class in zea.ops.keras_ops) block_until_ready() (in module zea.utils) blue() (in module zea.log) bold() (in module zea.log) boolean_mask() (in module zea.func) BroadcastTo (class in zea.ops.keras_ops) build() (zea.backend.tensorflow.models.lista.Prox method) (zea.data.augmentations.RandomCircleInclusion method) (zea.models.echonet.EchoNetDynamic method) (zea.models.taesd.TinyBase method) builtin_presets() (in module zea.models.preset_utils)

C

calculate_delays() (in module zea.beamform.beamformer) calculate_delays_heterogeneous_medium() (in module zea.beamform.beamformer) call() (zea.backend.tensorflow.losses.SMSLE method) (zea.backend.tensorflow.models.lista.Prox method) (zea.data.augmentations.RandomCircleInclusion method) (zea.data.layers.Pad method) (zea.data.layers.Resizer method) (zea.models.carotid_segmenter.CarotidSegmenter method) (zea.models.dense.DenseNet method) (zea.models.dense.DenseTimeConditionalNet method) (zea.models.diffusion.DDS method) (zea.models.diffusion.DiffusionModel method) (zea.models.echonet.EchoNetDynamic method) (zea.models.echonetlvh.EchoNetLVH method) (zea.models.hvae.HierarchicalVAE method) (zea.models.lpips.LPIPS method) (zea.models.lv_segmentation.AugmentedCamusSeg method) (zea.models.regional_quality.MobileNetv2RegionalQuality method) (zea.models.taesd.TinyAutoencoder method) (zea.models.taesd.TinyBase method) (zea.models.unet.UNet method) (zea.models.unet.UNetTimeConditional method) (zea.ops.AnisotropicDiffusion method) (zea.ops.ApplyWindow method) (zea.ops.BandPassFilter method) (zea.ops.ChannelsToComplex method) (zea.ops.CommonMidpointPhaseError method) (zea.ops.Companding method) (zea.ops.ComplexToChannels method) (zea.ops.DelayAndSum method) (zea.ops.DelayMultiplyAndSum method) (zea.ops.Demodulate method) (zea.ops.Downsample method) (zea.ops.EnvelopeDetect method) (zea.ops.FirFilter method) (zea.ops.GaussianBlur method) (zea.ops.Identity method) (zea.ops.Lambda method) (zea.ops.LeeFilter method) (zea.ops.LogCompress method) (zea.ops.LowPassFilterIQ method) (zea.ops.Map method) (zea.ops.Mean method) (zea.ops.Normalize method) (zea.ops.Operation method) (zea.ops.Pad method) (zea.ops.PfieldWeighting method) (zea.ops.Pipeline method) (zea.ops.ReshapeGrid method) (zea.ops.ScanConvert method) (zea.ops.Simulate method) (zea.ops.Threshold method) (zea.ops.TOFCorrection method) (zea.ops.UpMix method) canonicalize_axis() (in module zea.utils) CarotidSegmenter (class in zea.models.carotid_segmenter) cart2pol() (in module zea.display) cartesian_pixel_grid() (in module zea.beamform.pixelgrid) cartesian_to_polar_matrix() (in module zea.data.convert.echonet) (in module zea.display) Cast (class in zea.ops.keras_ops) cast_to_integer() (zea.data.convert.verasonics.VerasonicsFile static method) Cbrt (class in zea.ops.keras_ops) Ceil (class in zea.ops.keras_ops) Celu (class in zea.ops.keras_ops) channels_to_complex() (in module zea.func) ChannelsToComplex (class in zea.ops) check_config() (in module zea.config) check_config_class() (in module zea.models.preset_utils) check_file_exists() (in module zea.models.preset_utils) check_for_aliasing() (in module zea.beamform.pixelgrid) check_for_display() (zea.interface.Interface method) check_model_class() (zea.models.preset_utils.KerasPresetLoader method) check_patches_fit() (in module zea.func) Cholesky (class in zea.ops.keras_ops) CholeskyInverse (class in zea.ops.keras_ops) choose_file_path() (zea.interface.Interface method) clear() (zea.config.Config method) clear_cache() (zea.ops.Operation method) Clip (class in zea.ops.keras_ops) close() (zea.data.datasets.H5FileHandleCache method)

cnr() (in module zea.metrics) color_doppler() (in module zea.doppler) CommonMidpointPhaseError (class in zea.ops) Companding (class in zea.ops) complex_rotate() (in module zea.beamform.beamformer) complex_to_channels() (in module zea.func) ComplexToChannels (class in zea.ops) compound_frames() (in module zea.data.file_operations) compound_transmits() (in module zea.data.file_operations) compute_error() (zea.models.diffusion.DPS method) compute_global_palette_by_histogram() (in module zea.io_lib) compute_lens_corrected_travel_times() (in module zea.beamform.lens_correction) compute_output_and_saliency_propagation() (zea.agent.selection.TaskBasedLines method) compute_output_shape() (zea.backend.tensorflow.models.lista.Prox method) (zea.data.augmentations.RandomCircleInclusion method) compute_pairwise_pixel_gaussian_error() (zea.agent.selection.GreedyEntropy static method) compute_pixelwise_entropy() (zea.agent.selection.GreedyEntropy static method) compute_required_patch_overlap() (in module zea.func) compute_required_patch_shape() (in module zea.func) compute_scan_convert_2d_coordinates() (in module zea.display) compute_scan_convert_3d_coordinates() (in module zea.display) compute_t0_delays_focused() (in module zea.beamform.delays) compute_t0_delays_planewave() (in module zea.beamform.delays) compute_time_to_peak() (in module zea.func) compute_time_to_peak_stack() (in module zea.func) compute_travel_time() (in module zea.beamform.lens_correction) compute_xl() (in module zea.beamform.lens_correction) Config (class in zea.config) configure_console_logger() (in module zea.log) configure_file_logger() (in module zea.log) Conj (class in zea.ops.keras_ops) Conjugate (class in zea.ops.keras_ops) conjugate_gradient_inner_loop() (zea.models.diffusion.DDS method) contrast() (in module zea.metrics) convert() (in module zea.data.convert.picmus) convert_camus() (in module zea.data.convert.camus) convert_cetus() (in module zea.data.convert.cetus) convert_echonet() (in module zea.data.convert.echonet) convert_echonetlvh() (in module zea.data.convert.echonetlvh) convert_image_dataset() (in module zea.data.convert.images) convert_measurements_csv() (in module zea.data.convert.echonetlvh) convert_picmus() (in module zea.data.convert.picmus) convert_verasonics() (in module zea.data.convert.verasonics) ConvertToNumpy (class in zea.ops.keras_ops) ConvertToTensor (class in zea.ops.keras_ops) convolution_block() (in module zea.models.deeplabv3) coordinates (zea.scan.Scan property) coordinates_2d (zea.scan.Scan property) coordinates_3d (zea.scan.Scan property) Copy (class in zea.ops.keras_ops) copy() (zea.config.Config method) (zea.data.datasets.Folder method) (zea.ops.Pipeline method) copy_key() (zea.data.file.File method) Corrcoef (class in zea.ops.keras_ops) correlate() (in module zea.func) Cos (class in zea.ops.keras_ops) Cosh (class in zea.ops.keras_ops) count_init() (in module zea.data.convert.echonet) count_samples_per_directory() (in module zea.data.datasets) CountNonzero (class in zea.ops.keras_ops) CovarianceSamplingLines (class in zea.agent.selection) create_new_user() (in module zea.datapaths) create_probe_geometry() (in module zea.probes) create_subapertures() (zea.ops.CommonMidpointPhaseError method) critical() (in module zea.log) crop_and_center_cone() (in module zea.tools.fit_scan_cone) crop_array() (in module zea.tools.selection_tool) crop_frame_with_params() (in module zea.data.convert.echonetlvh) crop_sequence_with_params() (in module zea.data.convert.echonetlvh) CropImages (class in zea.ops.keras_ops) Cumprod (class in zea.ops.keras_ops) Cumsum (class in zea.ops.keras_ops) custom_load_weights() (zea.models.echonet.EchoNetDynamic method) (zea.models.hvae.HierarchicalVAE method) (zea.models.lpips.LPIPS method) (zea.models.lv_segmentation.AugmentedCamusSeg method) (zea.models.regional_quality.MobileNetv2RegionalQuality method) (zea.models.taesd.TinyAutoencoder method) (zea.models.taesd.TinyBase method) CustomFormatter (class in zea.log) cyan() (in module zea.log)

D

darkgreen() (in module zea.log) data (zea.data.data_format.DatasetElement attribute) data_root (zea.interface.Interface property) data_to_display() (zea.interface.Interface method) Dataset (class in zea.data.datasets) dataset_folder (zea.interface.Interface property) dataset_name (zea.data.data_format.DatasetElement attribute) DatasetElement (class in zea.data.data_format) date_string_to_readable() (in module zea.utils) DDS (class in zea.models.diffusion) debug() (in module zea.log) decode() (zea.models.taesd.TinyAutoencoder method) decode_file_info() (in module zea.data.utils) decode_string() (zea.data.convert.verasonics.VerasonicsFile static method) deep_compare() (in module zea.utils) DeepGenerativeModel (class in zea.models.generative) DeeplabV3Plus() (in module zea.models.deeplabv3) default() (zea.data.utils.ZeaJSONEncoder method) Deg2rad (class in zea.ops.keras_ops) delay2() (in module zea.simulator) DelayAndSum (class in zea.ops) DelayMultiplyAndSum (class in zea.ops) Demodulate (class in zea.ops) demodulate() (in module zea.func) demodulate_not_jitable() (in module zea.func) demodulation_frequency (zea.data.convert.verasonics.VerasonicsFile property) (zea.scan.Scan property) denoise() (zea.models.diffusion.DiffusionModel method) DenseNet (class in zea.models.dense) DenseTimeConditionalNet (class in zea.models.dense) deprecated() (in module zea.log) dereference_all() (zea.data.convert.verasonics.VerasonicsFile method) dereference_index() (zea.data.convert.verasonics.VerasonicsFile method) description (zea.data.data_format.DatasetElement attribute) (zea.data.file.File property)

deserialize_zea_object() (in module zea.models.base) Det (class in zea.ops.keras_ops) detect_cone_parameters() (in module zea.tools.fit_scan_cone) Diag (class in zea.ops.keras_ops) Diagflat (class in zea.ops.keras_ops) Diagonal (class in zea.ops.keras_ops) dict_to_sorted_list() (in module zea.data.file) diffusion_schedule() (zea.models.diffusion.DiffusionModel method) DiffusionGuidance (class in zea.models.diffusion) DiffusionModel (class in zea.models.diffusion) Digitize (class in zea.ops.keras_ops) DilatedSpatialPyramidPooling() (in module zea.models.deeplabv3) directivity() (in module zea.simulator) distance_Rx() (in module zea.beamform.beamformer) distance_to_apex (zea.scan.Scan property) DotDict (class in zea.backend.tensorflow.utils.utils) DownBlock() (in module zea.models.layers) download_camus() (in module zea.data.convert.camus) download_cetus() (in module zea.data.convert.cetus) download_from_girder() (in module zea.data.convert.utils) Downsample (class in zea.ops) DPS (class in zea.models.diffusion) dst python--m-zea.data command line option python--m-zea.data.convert-camus command line option python--m-zea.data.convert-cetus command line option python--m-zea.data.convert-echonet command line option python--m-zea.data.convert-echonetlvh command line option python--m-zea.data.convert-picmus command line option python--m-zea.data.convert-verasonics command line option Dtype (class in zea.ops.keras_ops) dtype (zea.interface.Interface property) dxl() (in module zea.beamform.lens_correction)

E

EchoNetDynamic (class in zea.models.echonet) EchoNetLVH (class in zea.models.echonetlvh) Eig (class in zea.ops.keras_ops) Eigh (class in zea.ops.keras_ops) ElasticTransform (class in zea.ops.keras_ops) element_width (zea.data.convert.verasonics.VerasonicsFile property) (zea.scan.Scan property) Elu (class in zea.ops.keras_ops) enable_file_logging() (in module zea.log) encode() (zea.models.taesd.TinyAutoencoder method) end_samples (zea.data.convert.verasonics.VerasonicsFile property) envelope_detect() (in module zea.func) EnvelopeDetect (class in zea.ops) equalize_polygons() (in module zea.tools.selection_tool) EquispacedLines (class in zea.agent.selection) Erf (class in zea.ops.keras_ops) Erfinv (class in zea.ops.keras_ops) error() (in module zea.log)

Esaote_sll1543 (class in zea.probes) evaluate_recovered_circle_accuracy() (zea.data.augmentations.RandomCircleInclusion method) event_keys (zea.data.file.File property) events_have_same_shape() (zea.data.file.File method) Exp (class in zea.ops.keras_ops) Exp2 (class in zea.ops.keras_ops) ExpandDims (class in zea.ops.keras_ops) expected_coordinate() (zea.models.echonetlvh.EchoNetLVH method) Expm1 (class in zea.ops.keras_ops) export_to_yaml() (zea.utils.FunctionTimer method) extend_n_dims() (in module zea.func) extent (zea.scan.Scan property) extract_frames_transmits() (in module zea.data.file_operations) extract_key_points_as_indices() (zea.models.echonetlvh.EchoNetLVH method) extract_polygon_from_mask() (in module zea.tools.selection_tool) extract_rectangle_from_mask() (in module zea.tools.selection_tool) ExtractPatches (class in zea.ops.keras_ops) ExtractSequences (class in zea.ops.keras_ops)

F

Fft (class in zea.ops.keras_ops) Fft2 (class in zea.ops.keras_ops) fibonacci() (in module zea.beamform.phantoms) File (class in zea.data.file) file_path (zea.interface.Interface property) filter_edge_points_by_boundary() (in module zea.tools.fit_scan_cone) find_avi_file() (in module zea.data.convert.echonetlvh) (in module zea.data.convert.echonetlvh.precompute_crop) find_contour() (in module zea.func) find_files() (zea.data.datasets.Dataset method) find_h5_files() (zea.data.datasets.Folder method) find_split_for_file() (in module zea.data.convert.echonet) FirFilter (class in zea.ops) fish() (in module zea.beamform.phantoms) fit() (zea.models.generative.GenerativeModel method) (zea.models.gmm.GaussianMixtureModel method) fit_and_crop_around_scan_cone() (in module zea.tools.fit_scan_cone) flat_pfield (zea.scan.Scan property) flatgrid (zea.scan.Scan property) flatten() (in module zea.func) Flip (class in zea.ops.keras_ops) Floor (class in zea.ops.keras_ops) fnum_window_fn_hann() (in module zea.beamform.beamformer) fnum_window_fn_rect() (in module zea.beamform.beamformer) fnum_window_fn_tukey() (in module zea.beamform.beamformer) fnumber_mask() (in module zea.beamform.beamformer) focus_distances (zea.scan.Scan property) Folder (class in zea.data.datasets) fori_loop() (in module zea.func) format() (zea.log.CustomFormatter method)

format_data_path() (in module zea.datapaths) format_key() (zea.data.file.File method) forward() (zea.backend.torch.losses.SMSLE method) frame_no (zea.interface.Interface property) frames_per_second (zea.scan.Scan property) freeze() (zea.config.Config method) from_config() (zea.data.datasets.Dataset class method) (zea.models.base.BaseModel class method) (zea.ops.Pipeline class method) from_default() (zea.ops.Pipeline class method) from_hf() (zea.config.Config class method) from_json() (zea.ops.Pipeline class method) from_name() (zea.probes.Probe class method) from_parameters() (zea.probes.Probe class method) from_path() (zea.config.Config class method) (zea.ops.Pipeline class method) from_preset() (zea.models.base.BaseModel class method) from_yaml() (zea.config.Config class method) (zea.ops.Pipeline class method) fromkeys() (zea.config.Config method) frustum_convert_rt2xz() (in module zea.display) frustum_convert_rtp2xyz() (in module zea.display) frustum_convert_xyz2rtp() (in module zea.display) frustum_convert_xz2rt() (in module zea.display) FullLike (class in zea.ops.keras_ops) func_on_device() (in module zea.backend) (in module zea.backend.torch) func_with_one_batch_dim() (in module zea.func) FunctionTimer (class in zea.utils) fwhm() (in module zea.metrics)

G

gaussian_filter() (in module zea.func) gaussian_filter1d() (in module zea.func) GaussianBlur (class in zea.ops) (class in zea.ops.keras_ops) GaussianMixtureModel (class in zea.models.gmm) gcnr() (in module zea.metrics) Gelu (class in zea.ops.keras_ops) generate_example_dataset() (in module zea.data.data_format) generate_h5_indices() (in module zea.data.dataloader) generate_zea_dataset() (in module zea.data.data_format) GenerativeModel (class in zea.models.generative) get() (zea.config.Config method) get_activation() (in module zea.backend.tensorflow.layers.utils) get_answer() (in module zea.data.convert.verasonics) get_args() (in module zea.tools.fit_scan_cone) get_band_pass_filter() (in module zea.func) get_config() (zea.data.augmentations.RandomCircleInclusion method) (zea.models.carotid_segmenter.CarotidSegmenter method) (zea.models.dense.DenseNet method) (zea.models.dense.DenseTimeConditionalNet method) (zea.models.diffusion.DiffusionModel method) (zea.models.unet.UNet method) (zea.models.unet.UNetTimeConditional method) get_context() (zea.backend.on_device method) get_data() (zea.interface.Interface method) get_data_types() (zea.data.datasets.Folder static method) get_date_string() (in module zea.utils) get_dense_network() (in module zea.models.dense) get_device() (zea.backend.on_device method) get_dict() (zea.ops.Beamform method) (zea.ops.Lambda method) (zea.ops.Map method) (zea.ops.Operation method) (zea.ops.PatchedGrid method) (zea.ops.Pipeline method) get_event_shapes() (zea.data.file.File method) get_file() (in module zea.models.preset_utils) (zea.data.datasets.H5FileHandleCache method) (zea.models.preset_utils.KerasPresetLoader method) get_format_fn() (in module zea.log) get_frame_count() (zea.data.convert.verasonics.VerasonicsFile method) get_frame_indices() (zea.data.convert.verasonics.VerasonicsFile method) get_gradient_and_value_jit_fn() (zea.backend.autograd.AutoGrad method)

get_gradient_jit_fn() (zea.backend.autograd.AutoGrad method) get_image_data_p_frame_order() (zea.data.convert.verasonics.VerasonicsFile method) get_indices_to_reorder() (zea.data.convert.verasonics.VerasonicsFile method) get_low_pass_iq_filter() (in module zea.func) get_lpips() (in module zea.metrics) get_metric() (in module zea.metrics) get_model_kwargs() (zea.models.preset_utils.PresetLoader method) get_ops() (in module zea.ops) get_parameters() (zea.data.file.File method) (zea.probes.Probe method) get_params() (zea.ops.Pipeline method) get_parser() (in module zea.data.file_operations) get_preset_loader() (in module zea.models.preset_utils) get_preset_saver() (in module zea.models.preset_utils) get_probe_parameters() (zea.data.file.File method) get_pulse_spectrum_fn() (in module zea.simulator) get_raw_data_order() (zea.data.convert.verasonics.VerasonicsFile method) get_reference_size() (zea.data.convert.verasonics.VerasonicsFile static method) get_scan_parameters() (zea.data.file.File method) get_shape() (zea.data.file.File class method) get_split() (in module zea.data.convert.camus) (in module zea.data.convert.cetus) (zea.data.convert.echonet.H5Processor method) (zea.data.convert.echonetlvh.LVHProcessor method) get_stats() (zea.utils.FunctionTimer method) get_time_conditional_dense_network() (in module zea.models.dense) get_time_conditional_unetwork() (in module zea.models.unet) get_transducer_bandwidth_fn() (in module zea.simulator) get_unetwork() (in module zea.models.unet) GetItem (class in zea.ops.keras_ops) Glu (class in zea.ops.keras_ops) golden_ratio() (in module zea.beamform.phantoms) gradient() (zea.backend.autograd.AutoGrad method) gradient_and_value() (zea.backend.autograd.AutoGrad method) grayscale_to_rgb() (in module zea.io_lib) GreedyEntropy (class in zea.agent.selection) green() (in module zea.log) grid (zea.scan.Scan property) grid_size_x (zea.scan.Scan property) grid_size_y (zea.scan.Scan property) grid_size_z (zea.scan.Scan property) group_name (zea.data.data_format.DatasetElement attribute) gumbel_sample() (zea.agent.gumbel.SubsetOperator method)

H

H5FileHandleCache (class in zea.data.datasets) H5Generator (class in zea.data.dataloader) H5GeneratorTF (class in zea.backend.tensorflow.dataloader) H5Processor (class in zea.data.convert.echonet) Hamming (class in zea.ops.keras_ops) hann_fd() (in module zea.simulator) hann_unnormalized() (in module zea.simulator) Hanning (class in zea.ops.keras_ops) hard_straight_through() (in module zea.agent.gumbel) HardShrink (class in zea.ops.keras_ops)

HardSigmoid (class in zea.ops.keras_ops) HardSilu (class in zea.ops.keras_ops) HardSwish (class in zea.ops.keras_ops) HardTanh (class in zea.ops.keras_ops) has_events (zea.data.file.File property) has_key() (zea.data.file.File method) HFPath (class in zea.tools.hf) HierarchicalVAE (class in zea.models.hvae) hilbert() (in module zea.func) Histogram (class in zea.ops.keras_ops) HsvToRgb (class in zea.ops.keras_ops)

I

Identity (class in zea.ops) Ifft2 (class in zea.ops.keras_ops) Imag (class in zea.ops.keras_ops) images_to_patches() (in module zea.func) indices_to_k_hot() (in module zea.agent.masks) info() (in module zea.log) init_device() (in module zea) initial_equispaced_lines() (in module zea.agent.masks) initial_sample_stateless() (zea.agent.selection.EquispacedLines method) initial_times (zea.scan.Scan property) input_data_type (zea.ops.Pipeline property) input_path python--m-zea.data.file_operations-compound_frames command line option python--m-zea.data.file_operations-compound_transmits command line option python--m-zea.data.file_operations-extract command line option python--m-zea.data.file_operations-resave command line option input_paths python--m-zea.data.file_operations-sum command line option insert() (zea.ops.Pipeline method) interactive_selector() (in module zea.tools.selection_tool) interactive_selector_for_dataset() (in module zea.tools.selection_tool) interactive_selector_with_plot_and_metric() (in module zea.tools.selection_tool) Interface (class in zea.interface)

interpolate_data() (in module zea.func) interpolate_masks() (in module zea.tools.selection_tool) interpolate_polygons() (in module zea.tools.selection_tool) interpolate_rectangles() (in module zea.tools.selection_tool) Inv (class in zea.ops.keras_ops) inverse_scan_convert_2d() (in module zea.display) Irfft (class in zea.ops.keras_ops) is_3d (zea.scan.Scan property) is_baseband_mode (zea.data.convert.verasonics.VerasonicsFile property) is_dir() (zea.tools.hf.HFPath method) is_file() (zea.tools.hf.HFPath method) is_jax_prng_key() (in module zea.func) is_monotonic() (in module zea.func) is_new_save_raw_format (zea.data.convert.verasonics.VerasonicsFile property) Isfinite (class in zea.ops.keras_ops) Isinf (class in zea.ops.keras_ops) Isnan (class in zea.ops.keras_ops) Isneginf (class in zea.ops.keras_ops) Isposinf (class in zea.ops.keras_ops) Isreal (class in zea.ops.keras_ops) IsTensor (class in zea.ops.keras_ops) Istft (class in zea.ops.keras_ops) items() (zea.config.Config method) iterator() (zea.data.dataloader.H5Generator method)

J

jax_memory_cleanup() (in module zea.models.preset_utils) jit() (in module zea.backend) (zea.ops.Map method) (zea.ops.Pipeline method) jit_options (zea.ops.Map property) (zea.ops.Pipeline property)

jittable (zea.ops.Operation property) (zea.ops.Pipeline property) jittable_call() (zea.ops.Map method) joinpath() (zea.tools.hf.HFPath method) json_dumps() (in module zea.data.utils) json_loads() (in module zea.data.utils)

K

k_hot_to_indices() (in module zea.agent.masks) Kaiser (class in zea.ops.keras_ops) keras_to_zea_registry() (in module zea.models.preset_utils) KerasPresetLoader (class in zea.models.preset_utils) KerasPresetSaver (class in zea.models.preset_utils)

key python--m-zea.data command line option key (zea.ops.Pipeline property) key_to_data_type() (zea.data.file.File static method) keys() (zea.config.Config method)

L

L1() (in module zea.func) L2() (in module zea.func) Lambda (class in zea.ops) LayerNormalization (class in zea.ops.keras_ops) LeakyRelu (class in zea.ops.keras_ops) LeeFilter (class in zea.ops) LeftShift (class in zea.ops.keras_ops) lens_correction (zea.data.convert.verasonics.VerasonicsFile property) linear_diffusion_schedule() (zea.models.diffusion.DiffusionModel method) linear_model() (in module zea.models.lpips) linear_sum_assignment() (in module zea.func) lines_to_im_size() (in module zea.agent.masks) (zea.agent.selection.LinesActionModel method) LinesActionModel (class in zea.agent.selection) lissajous() (in module zea.beamform.phantoms) load() (zea.data.dataloader.H5Generator method) (zea.ops.Pipeline class method) load_additional_elements() (in module zea.data.data_format) load_avi() (in module zea.data.convert.utils) load_cone_parameters() (in module zea.data.convert.echonetlvh) load_convert_config() (zea.data.convert.verasonics.VerasonicsFile method) load_data() (zea.data.file.File method) load_description() (in module zea.data.data_format) load_file() (in module zea) (in module zea.data.file) load_file_all_data_types() (in module zea.data.file) load_file_shapes() (zea.data.datasets.Dataset method) (zea.data.datasets.Folder method) load_first_frame() (in module zea.data.convert.echonetlvh.precompute_crop) load_image() (in module zea.io_lib) load_image_converter() (zea.models.preset_utils.KerasPresetLoader method) load_json() (in module zea.models.preset_utils)

load_model() (zea.models.preset_utils.KerasPresetLoader method) (zea.models.preset_utils.PresetLoader method) load_model_from_hf() (in module zea.tools.hf) load_preprocessor() (zea.models.preset_utils.KerasPresetLoader method) (zea.models.preset_utils.PresetLoader method) load_scan() (zea.data.file.File method) load_serialized_object() (in module zea.models.preset_utils) load_splits() (in module zea.data.convert.echonetlvh) (in module zea.data.convert.echonetlvh.precompute_crop) load_transmits() (zea.data.file.File method) load_video() (in module zea.io_lib) Log (class in zea.ops.keras_ops) Log10 (class in zea.ops.keras_ops) Log1p (class in zea.ops.keras_ops) Log2 (class in zea.ops.keras_ops) log_compress() (in module zea.func) log_density() (zea.models.generative.GenerativeModel method) (zea.models.gmm.GaussianMixtureModel method) (zea.models.hvae.HierarchicalVAE method) log_likelihood() (zea.models.diffusion.DiffusionModel method) LogCompress (class in zea.ops) Logdet (class in zea.ops.keras_ops) LogicalNot (class in zea.ops.keras_ops) LogSigmoid (class in zea.ops.keras_ops) LogSoftmax (class in zea.ops.keras_ops) Logsumexp (class in zea.ops.keras_ops) LossTrackerWrapper (class in zea.models.utils) LowPassFilterIQ (class in zea.ops) LPIPS (class in zea.models.lpips) LucasKanadeTracker (class in zea.tracking) LuFactor (class in zea.ops.keras_ops) LVHProcessor (class in zea.data.convert.echonetlvh)

M

mae() (in module zea.metrics) magenta() (in module zea.log) main() (in module zea.tools.fit_scan_cone) (in module zea.tools.selection_tool) make_dataloader() (in module zea.backend.tensorflow.dataloader) make_line_mask() (in module zea.agent.masks) make_tgc_curve() (in module zea.func) Map (class in zea.ops) map_coordinates() (in module zea.display) map_indices_for_interpolation() (in module zea.func) map_negative_indices() (in module zea.utils) MaskActionModel (class in zea.agent.selection) match_means_covariances() (in module zea.models.gmm) match_polygons() (in module zea.tools.selection_tool) matplotlib_figure_to_numpy() (in module zea.io_lib) matrix_power() (in module zea.func) Max (class in zea.ops.keras_ops) maybe_convert_to_jax() (zea.models.echonet.EchoNetDynamic method) (zea.models.taesd.TinyBase method) Mean (class in zea.ops) (class in zea.ops.keras_ops) Median (class in zea.ops.keras_ops) Meshgrid (class in zea.ops.keras_ops) Metrics (class in zea.metrics) metrics (zea.models.diffusion.DiffusionModel property) Min (class in zea.ops.keras_ops) MissingKerasOps MobileNetv2RegionalQuality (class in zea.models.regional_quality) model_directory_from_wandb() (in module zea.tools.wndb) module zea zea.agent zea.agent.gumbel zea.agent.masks zea.agent.selection zea.backend zea.backend.autograd zea.backend.jax zea.backend.optimizer zea.backend.tensorflow zea.backend.tensorflow.dataloader zea.backend.tensorflow.layers zea.backend.tensorflow.layers.apodization zea.backend.tensorflow.layers.utils zea.backend.tensorflow.losses zea.backend.tensorflow.models zea.backend.tensorflow.models.lista zea.backend.tensorflow.utils zea.backend.tensorflow.utils.callbacks zea.backend.tensorflow.utils.utils zea.backend.torch zea.backend.torch.losses zea.beamform zea.beamform.beamformer zea.beamform.delays zea.beamform.lens_correction zea.beamform.pfield zea.beamform.phantoms zea.beamform.pixelgrid zea.config zea.data zea.data.augmentations zea.data.convert zea.data.convert.camus zea.data.convert.cetus zea.data.convert.echonet zea.data.convert.echonetlvh zea.data.convert.echonetlvh.precompute_crop zea.data.convert.images zea.data.convert.picmus zea.data.convert.utils zea.data.convert.verasonics zea.data.data_format zea.data.dataloader zea.data.datasets zea.data.file zea.data.file_operations zea.data.layers zea.data.preset_utils zea.data.utils zea.datapaths zea.display zea.doppler zea.func zea.interface zea.io_lib zea.log zea.metrics zea.models zea.models.base zea.models.carotid_segmenter zea.models.deeplabv3 zea.models.dense zea.models.diffusion zea.models.echonet zea.models.echonetlvh zea.models.generative zea.models.gmm zea.models.hvae zea.models.layers zea.models.lpips zea.models.lv_segmentation zea.models.preset_utils zea.models.presets zea.models.regional_quality zea.models.taesd zea.models.unet zea.models.utils zea.ops zea.ops.keras_ops zea.probes zea.scan zea.simulator zea.tools zea.tools.fit_scan_cone zea.tools.hf zea.tools.selection_tool zea.tools.wndb zea.tracking zea.utils zea.visualize

Moments (class in zea.ops.keras_ops) Moveaxis (class in zea.ops.keras_ops) mse() (in module zea.metrics)

N

n_ax (zea.data.convert.verasonics.VerasonicsFile property) n_files (zea.data.datasets.Dataset property) (zea.data.datasets.Folder property) n_frames (zea.data.file.File property) n_tx (zea.scan.Scan property) n_tx_total (zea.scan.Scan property) n_waveforms (zea.scan.Scan property) name (zea.data.file.File property) NanToNum (class in zea.ops.keras_ops) ncc() (in module zea.metrics) Ndim (class in zea.ops.keras_ops) needs() (zea.ops.Pipeline method)

needs_keys (zea.ops.Operation property) (zea.ops.Pipeline property) Negative (class in zea.ops.keras_ops) next_equispaced_lines() (in module zea.agent.masks) Nonzero (class in zea.ops.keras_ops) nonzero() (in module zea.func) Norm (class in zea.ops.keras_ops) Normalize (class in zea.ops) (class in zea.ops.keras_ops) normalize() (in module zea.func) normalize_pressure_field() (in module zea.beamform.pfield) NoYamlFileError number_to_str() (in module zea.log)

O

on_device (class in zea.backend) OneHot (class in zea.ops.keras_ops) OnesLike (class in zea.ops.keras_ops) Operation (class in zea.ops) operations (zea.ops.Pipeline property) orange() (in module zea.log) output_data_type (zea.ops.Pipeline property) output_key (zea.ops.Pipeline property) output_keys (zea.ops.Operation property) (zea.ops.Pipeline property)

output_path python--m-zea.data.file_operations-compound_frames command line option python--m-zea.data.file_operations-compound_transmits command line option python--m-zea.data.file_operations-extract command line option python--m-zea.data.file_operations-resave command line option python--m-zea.data.file_operations-sum command line option output_signature (zea.backend.tensorflow.dataloader.H5GeneratorTF property) overlay_labels_on_image() (zea.models.echonetlvh.EchoNetLVH method) overwrite_splits() (in module zea.data.convert.echonetlvh)

P

Pad (class in zea.data.layers) (class in zea.ops) (class in zea.ops.keras_ops) pad() (zea.ops.Pad method) pad_array_to_divisible() (in module zea.func) pad_or_crop_extent() (in module zea.visualize) PadImages (class in zea.ops.keras_ops) partial_inference() (zea.models.hvae.HierarchicalVAE method) PatchedGrid (class in zea.ops) patches_to_images() (in module zea.func) path (zea.data.file.File property) perceptual_model() (in module zea.models.lpips) PerspectiveTransform (class in zea.ops.keras_ops) pfield (zea.scan.Scan property) PfieldWeighting (class in zea.ops) Pipeline (class in zea.ops) planewave_focal_distance_to_inf() (zea.data.convert.verasonics.VerasonicsFile method) plot() (zea.interface.Interface method) plot_biplanes() (in module zea.visualize) plot_frustum_vertices() (in module zea.visualize) plot_image_grid() (in module zea.visualize) plot_quadrants() (in module zea.visualize) plot_rectangle_from_mask() (in module zea.visualize) plot_shape_from_mask() (in module zea.visualize) plot_t0_delays() (in module zea.beamform.delays) polar_angles (zea.scan.Scan property) polar_limits (zea.scan.Scan property) polar_pixel_grid() (in module zea.beamform.pixelgrid) pop() (zea.config.Config method) popitem() (zea.config.Config method) posterior_sample() (zea.models.diffusion.DiffusionModel method) (zea.models.generative.GenerativeModel method) (zea.models.gmm.GaussianMixtureModel method) (zea.models.hvae.HierarchicalVAE method) precompute_cone_parameters() (in module zea.data.convert.echonetlvh.precompute_crop) prepare_diffusion() (zea.models.diffusion.DiffusionModel method) prepare_parameters() (zea.ops.Pipeline method) prepare_schedule() (zea.models.diffusion.DiffusionModel method) prepend() (zea.ops.Pipeline method) preprocess_for_saving() (in module zea.io_lib) preprocess_input() (zea.models.lpips.LPIPS static method) (zea.models.regional_quality.MobileNetv2RegionalQuality method) PresetLoader (class in zea.models.preset_utils) presets (zea.models.base.BaseModel attribute) print() (zea.utils.FunctionTimer method) print_clear_line() (in module zea.utils) Probe (class in zea.probes) probe() (zea.data.file.File method) probe_center_frequency (zea.data.convert.verasonics.VerasonicsFile property) probe_connector (zea.data.convert.verasonics.VerasonicsFile property) probe_geometry (zea.data.convert.verasonics.VerasonicsFile property) probe_name (zea.data.convert.verasonics.VerasonicsFile property) (zea.data.file.File property) probe_unit (zea.data.convert.verasonics.VerasonicsFile property) process_camus() (in module zea.data.convert.camus) process_cetus() (in module zea.data.convert.cetus) process_image() (zea.ops.DelayMultiplyAndSum method) process_phase_map() (zea.ops.CommonMidpointPhaseError method) Prod (class in zea.ops.keras_ops) Prox (class in zea.backend.tensorflow.models.lista) psnr() (in module zea.metrics) pulse_repetition_frequency (zea.scan.Scan property) purple() (in module zea.log) python--m-zea.data command line option --help --mode -h dst key src python--m-zea.data.convert command line option --help -h python--m-zea.data.convert-camus command line option --download --help --no_hyperthreading -h dst src

python--m-zea.data.convert-cetus command line option --download --help --no_hyperthreading --upload -h dst src python--m-zea.data.convert-echonet command line option --help --no_hyperthreading --split_path -h dst src python--m-zea.data.convert-echonetlvh command line option --batch --convert_images --convert_measurements --force --help --max_files --no_rejection --rejection_path -h dst src python--m-zea.data.convert-picmus command line option --help -h dst src python--m-zea.data.convert-verasonics command line option --allow_accumulate --device --frames --help --no_compression -h dst src python--m-zea.data.file_operations command line option --help -h python--m-zea.data.file_operations-compound_frames command line option --help --overwrite -h input_path output_path python--m-zea.data.file_operations-compound_transmits command line option --help --overwrite -h input_path output_path python--m-zea.data.file_operations-extract command line option --frames --help --overwrite --transmits -h input_path output_path python--m-zea.data.file_operations-resave command line option --help --overwrite -h input_path output_path python--m-zea.data.file_operations-sum command line option --help --overwrite -h input_paths output_path

Q

Qr (class in zea.ops.keras_ops)

Quantile (class in zea.ops.keras_ops)

R

radial_pixel_grid() (in module zea.beamform.pixelgrid) random_uniform_lines() (in module zea.agent.masks) (zea.agent.selection.CovarianceSamplingLines method) RandomCircleInclusion (class in zea.data.augmentations) Ravel (class in zea.ops.keras_ops) read_azimuth_angles() (zea.data.convert.verasonics.VerasonicsFile method) read_beamsteering_angles() (zea.data.convert.verasonics.VerasonicsFile method) read_center_frequencies() (zea.data.convert.verasonics.VerasonicsFile method) read_center_frequency() (zea.data.convert.verasonics.VerasonicsFile method) read_focus_distances() (zea.data.convert.verasonics.VerasonicsFile method) read_image_data_p() (zea.data.convert.verasonics.VerasonicsFile method) read_initial_times() (zea.data.convert.verasonics.VerasonicsFile method) read_polar_angles() (zea.data.convert.verasonics.VerasonicsFile method) read_raw_data() (zea.data.convert.verasonics.VerasonicsFile method) read_t0_delays_apod() (zea.data.convert.verasonics.VerasonicsFile method) read_transmit_events() (zea.data.convert.verasonics.VerasonicsFile method) read_transmit_origins() (zea.data.convert.verasonics.VerasonicsFile method) read_verasonics_file() (zea.data.convert.verasonics.VerasonicsFile method) read_waveforms() (zea.data.convert.verasonics.VerasonicsFile method) Real (class in zea.ops.keras_ops) Reciprocal (class in zea.ops.keras_ops) reconstruct_mask_from_polygon() (in module zea.tools.selection_tool) reconstruct_mask_from_rectangle() (in module zea.tools.selection_tool) recursively_load_dict_contents_from_group() (zea.data.file.File method) red() (in module zea.log) register_presets() (in module zea.models.preset_utils) reinitialize() (zea.ops.Pipeline method) Relu (class in zea.ops.keras_ops) Relu6 (class in zea.ops.keras_ops) remove_color_escape_codes() (in module zea.log) remove_masks_from_axs() (in module zea.tools.selection_tool)

Repeat (class in zea.ops.keras_ops) repo_id (zea.tools.hf.HFPath property) resample() (in module zea.func) resave() (in module zea.data.file_operations) reset_state() (zea.models.utils.LossTrackerWrapper method) reset_timer() (zea.ops.Pipeline method) Reshape (class in zea.ops.keras_ops) reshape_axis() (in module zea.func) ReshapeGrid (class in zea.ops) ResidualBlock() (in module zea.models.layers) Resize (class in zea.ops.keras_ops) Resizer (class in zea.data.layers) result() (zea.models.utils.LossTrackerWrapper method) retry_on_io_error() (in module zea.io_lib) reverse_conditional_diffusion() (zea.models.diffusion.DiffusionModel method) reverse_diffusion() (zea.models.diffusion.DiffusionModel method) reverse_diffusion_step() (zea.models.diffusion.DiffusionModel method) reweight_entropies_around_line() (zea.agent.selection.GreedyEntropy method) Rfft (class in zea.ops.keras_ops) RgbToGrayscale (class in zea.ops.keras_ops) RgbToHsv (class in zea.ops.keras_ops) rho_range (zea.scan.Scan property) RightShift (class in zea.ops.keras_ops) RmsNormalization (class in zea.ops.keras_ops) Roll (class in zea.ops.keras_ops) rose() (in module zea.beamform.phantoms) rotate_coordinates() (in module zea.data.convert.echonet) (in module zea.display) Round (class in zea.ops.keras_ops) Rsqrt (class in zea.ops.keras_ops) run() (zea.interface.Interface method) run_movie() (zea.interface.Interface method)

S

sample() (zea.agent.selection.CovarianceSamplingLines method) (zea.agent.selection.EquispacedLines method) (zea.agent.selection.GreedyEntropy method) (zea.agent.selection.TaskBasedLines method) (zea.agent.selection.UniformRandomLines method) (zea.models.diffusion.DiffusionModel method) (zea.models.generative.GenerativeModel method) (zea.models.gmm.GaussianMixtureModel method) (zea.models.hvae.HierarchicalVAE method) sample_stateless() (zea.agent.selection.EquispacedLines method) sampling_frequency (zea.data.convert.verasonics.VerasonicsFile property) SaturateCast (class in zea.ops.keras_ops) save_file() (in module zea.data.file_operations) save_image() (zea.interface.Interface method) save_image_converter() (zea.models.preset_utils.KerasPresetSaver method) save_model() (zea.models.preset_utils.KerasPresetSaver method) save_preprocessor() (zea.models.preset_utils.KerasPresetSaver method) save_to_gif() (in module zea.io_lib) save_to_mp4() (in module zea.io_lib) save_to_preset() (zea.models.base.BaseModel method) save_to_yaml() (zea.config.Config method) save_video() (in module zea.io_lib) (zea.interface.Interface method) ScaleAndTranslate (class in zea.ops.keras_ops) Scan (class in zea.scan) scan() (zea.data.file.File method) scan_convert() (in module zea.display) scan_convert_2d() (in module zea.display) scan_convert_3d() (in module zea.display) ScanConvert (class in zea.ops) search_file_tree() (in module zea.io_lib) segment() (in module zea.data.convert.echonet) SegmentationTracker (class in zea.tracking) Selu (class in zea.ops.keras_ops) serialize() (zea.config.Config method) set_backend_for_notebooks() (zea.interface.Interface method) set_data_paths() (in module zea) (in module zea.datapaths) set_dtype_in_config() (in module zea.models.preset_utils) set_file_logger_directory() (in module zea.log) set_function() (zea.backend.autograd.AutoGrad method) set_input_cache() (zea.ops.Operation method) set_jit() (zea.ops.Operation method) set_level() (in module zea.log) set_mpl_style() (in module zea.visualize) set_output_cache() (zea.ops.Operation method) set_params() (zea.ops.Pipeline method) set_transmits() (zea.scan.Scan method) setdefault() (zea.config.Config method) setup() (in module zea) (zea.models.diffusion.DDS method) (zea.models.diffusion.DiffusionGuidance method) (zea.models.diffusion.DPS method) setup_config() (in module zea) Shape (class in zea.ops.keras_ops) shape() (zea.data.file.File method) Sigmoid (class in zea.ops.keras_ops) Sign (class in zea.ops.keras_ops) Signbit (class in zea.ops.keras_ops) Silu (class in zea.ops.keras_ops) simple_map() (in module zea.func) Simulate (class in zea.ops) simulate_rf() (in module zea.simulator) Sin (class in zea.ops.keras_ops) sinc() (in module zea.func) (in module zea.simulator)

Sinh (class in zea.ops.keras_ops) sinusoidal_embedding() (in module zea.models.layers) sitk_load() (in module zea.data.convert.utils) Size (class in zea.ops.keras_ops) Slogdet (class in zea.ops.keras_ops) SMSLE (class in zea.backend.tensorflow.losses) (class in zea.backend.torch.losses) snr() (in module zea.metrics) Softmax (class in zea.ops.keras_ops) Softplus (class in zea.ops.keras_ops) SoftShrink (class in zea.ops.keras_ops) Softsign (class in zea.ops.keras_ops) Sort (class in zea.ops.keras_ops) sound_speed (zea.data.convert.verasonics.VerasonicsFile property) Sparsemax (class in zea.ops.keras_ops) SparsePlus (class in zea.ops.keras_ops) SparseSigmoid (class in zea.ops.keras_ops) Split (class in zea.ops.keras_ops) split_files_by_directory() (in module zea.data.datasets) split_seed() (in module zea.func) split_volume_data_from_axis() (in module zea.func) spread() (in module zea.simulator) Sqrt (class in zea.ops.keras_ops) Square (class in zea.ops.keras_ops) square_wave_apodization() (in module zea.backend.tensorflow.layers.apodization) Squareplus (class in zea.ops.keras_ops) Squeeze (class in zea.ops.keras_ops) src python--m-zea.data command line option python--m-zea.data.convert-camus command line option python--m-zea.data.convert-cetus command line option python--m-zea.data.convert-echonet command line option python--m-zea.data.convert-echonetlvh command line option python--m-zea.data.convert-picmus command line option python--m-zea.data.convert-verasonics command line option ssim() (in module zea.metrics) Stack (class in zea.ops.keras_ops) stack_n_cols (zea.agent.selection.EquispacedLines attribute) (zea.agent.selection.LinesActionModel attribute) (zea.agent.selection.UniformRandomLines attribute) stack_volume_data_along_axis() (in module zea.func) start_samples (zea.data.convert.verasonics.VerasonicsFile property) start_track_progress() (zea.models.diffusion.DiffusionModel method) STATIC_PARAMS (zea.ops.ApplyWindow attribute) static_params (zea.ops.Operation property) (zea.ops.Pipeline property) STATIC_PARAMS (zea.ops.ScanConvert attribute) (zea.ops.Simulate attribute) (zea.ops.TOFCorrection attribute) Std (class in zea.ops.keras_ops) stem (zea.data.file.File property) Stft (class in zea.ops.keras_ops) store_progress() (zea.models.diffusion.DiffusionModel method) str_to_jax_device() (in module zea.backend.jax) strtobool() (in module zea.utils) subpath (zea.tools.hf.HFPath property) SubsetOperator (class in zea.agent.gumbel) success() (in module zea.log) Sum (class in zea.ops.keras_ops) sum_data() (in module zea.data.file_operations) sum_neighbouring_columns_into_n_possible_actions() (zea.agent.selection.TaskBasedLines method) summary() (zea.data.dataloader.H5Generator method) (zea.data.file.File method) Svd (class in zea.ops.keras_ops) Swapaxes (class in zea.ops.keras_ops) Swish (class in zea.ops.keras_ops)

T

t0_delays (zea.scan.Scan property) t_peak (zea.scan.Scan property) Take (class in zea.ops.keras_ops) TakeAlongAxis (class in zea.ops.keras_ops) Tan (class in zea.ops.keras_ops) Tanh (class in zea.ops.keras_ops) TanhShrink (class in zea.ops.keras_ops) TaskBasedLines (class in zea.agent.selection) tensorflow_dtype (zea.backend.tensorflow.dataloader.H5GeneratorTF property) test_step() (zea.models.diffusion.DiffusionModel method) tf_complex_resize() (in module zea.backend.tensorflow.layers.utils) tf_cropping_and_padding() (in module zea.backend.tensorflow.layers.utils) tf_function() (in module zea.backend) tf_snapshot() (in module zea.backend.tensorflow.utils.utils) tf_unwrap() (in module zea.backend.tensorflow.layers.utils) TFDatasetToKeras (class in zea.backend.tensorflow.dataloader) tgc_gain_curve (zea.data.convert.verasonics.VerasonicsFile property) (zea.scan.Scan property) theta_range (zea.scan.Scan property) Threshold (class in zea.ops) (class in zea.ops.keras_ops) Tile (class in zea.ops.keras_ops) time_to_next_transmit (zea.scan.Scan property) TinyAutoencoder (class in zea.models.taesd) TinyBase (class in zea.models.taesd) TinyDecoder (class in zea.models.taesd) TinyEncoder (class in zea.models.taesd) to_8bit() (in module zea.display) to_config() (zea.ops.Pipeline method) to_dtype (zea.interface.Interface property)

to_float32() (zea.ops.Normalize static method) to_iterator() (zea.data.file.File method) to_json() (zea.config.Config method) (zea.ops.Pipeline method) to_tensor() (zea.config.Config method) (zea.probes.Probe method) to_yaml() (zea.config.Config method) (zea.ops.Pipeline method) to_zea() (zea.data.convert.verasonics.VerasonicsFile method) tof_correction() (in module zea.beamform.beamformer) TOFCorrection (class in zea.ops) TopK (class in zea.ops.keras_ops) total_frames (zea.data.datasets.Dataset property) Trace (class in zea.ops.keras_ops) track() (zea.tracking.BaseTracker method) (zea.tracking.LucasKanadeTracker method) (zea.tracking.SegmentationTracker method) track_sequence() (zea.tracking.BaseTracker method) train_step() (zea.models.diffusion.DiffusionModel method) transform_measurement_coordinates_with_cone_params() (in module zea.data.convert.echonetlvh) transform_sc_image_to_polar() (in module zea.data.convert.camus) translate() (in module zea.func) transmit_delays() (in module zea.beamform.beamformer) transmit_origins (zea.scan.Scan property) Transpose (class in zea.ops.keras_ops) Tril (class in zea.ops.keras_ops) Triu (class in zea.ops.keras_ops) Trunc (class in zea.ops.keras_ops) tx_apodizations (zea.scan.Scan property) tx_waveform_indices (zea.scan.Scan property)

U

UNet (class in zea.models.unet) UNetTimeConditional (class in zea.models.unet) Unfold (class in zea.ops.keras_ops) UnfoldingModel() (in module zea.backend.tensorflow.models.lista) unfreeze() (zea.config.Config method) UniformRandomLines (class in zea.agent.selection) unit (zea.data.data_format.DatasetElement attribute) unjit() (zea.ops.Map method) (zea.ops.Pipeline method) unjitable_ops (zea.ops.Pipeline property) UnknownHostnameWarning UnknownLocalRemoteWarning

UnknownUsernameWarning Unstack (class in zea.ops.keras_ops) unzip() (in module zea.data.convert.utils) UpBlock() (in module zea.models.layers) update() (zea.config.Config method) update_dictionary() (in module zea.utils) update_imshow_with_mask() (in module zea.tools.selection_tool) update_recursive() (zea.config.Config method) update_state() (zea.models.utils.LossTrackerWrapper method) upload_cetus() (in module zea.data.convert.cetus) upload_folder_to_hf() (in module zea.tools.hf) UpMix (class in zea.ops) upmix() (in module zea.func)

V

valid_keys (zea.ops.FirFilter property) (zea.ops.Normalize property) (zea.ops.Operation property) (zea.ops.Pipeline property) VALID_PARAMS (zea.scan.Scan attribute) validate() (zea.data.file.File method) (zea.ops.Pipeline method) validate_file() (in module zea.data.file) validate_folder() (zea.data.datasets.Folder method) validate_input_data() (in module zea.data.data_format) validate_split_copy() (zea.data.convert.echonet.H5Processor method)

values() (zea.config.Config method) Var (class in zea.ops.keras_ops) Verasonics_l11_4v (class in zea.probes) Verasonics_l11_5v (class in zea.probes) VerasonicsFile (class in zea.data.convert.verasonics) View (class in zea.ops.keras_ops) ViewAsComplex (class in zea.ops.keras_ops) ViewAsReal (class in zea.ops.keras_ops) visualize_logits() (zea.models.echonetlvh.EchoNetLVH method) visualize_matrix() (in module zea.visualize) visualize_scan_cone() (in module zea.tools.fit_scan_cone) vmap() (in module zea.func)

W

warning() (in module zea.log) wavelength (zea.data.convert.verasonics.VerasonicsFile property) (zea.scan.Scan property) white() (in module zea.log)

with_batch_dim (zea.ops.Map property) (zea.ops.Pipeline property) wopt_mae() (in module zea.metrics) wopt_mse() (in module zea.metrics)

X

xlims (zea.scan.Scan property)

Y

yellow() (in module zea.log)

ylims (zea.scan.Scan property)

Z

zea module zea command line option --config --help --skip_validate_file --task -c -h -t zea.agent module zea.agent.gumbel module zea.agent.masks module zea.agent.selection module zea.backend module zea.backend.autograd module zea.backend.jax module zea.backend.optimizer module zea.backend.tensorflow module zea.backend.tensorflow.dataloader module zea.backend.tensorflow.layers module zea.backend.tensorflow.layers.apodization module zea.backend.tensorflow.layers.utils module zea.backend.tensorflow.losses module zea.backend.tensorflow.models module zea.backend.tensorflow.models.lista module zea.backend.tensorflow.utils module zea.backend.tensorflow.utils.callbacks module zea.backend.tensorflow.utils.utils module zea.backend.torch module zea.backend.torch.losses module zea.beamform module zea.beamform.beamformer module zea.beamform.delays module zea.beamform.lens_correction module zea.beamform.pfield module zea.beamform.phantoms module zea.beamform.pixelgrid module zea.config module zea.data module zea.data.augmentations module zea.data.convert module zea.data.convert.camus module zea.data.convert.cetus module zea.data.convert.echonet module zea.data.convert.echonetlvh module zea.data.convert.echonetlvh.precompute_crop module zea.data.convert.images module zea.data.convert.picmus module zea.data.convert.utils module zea.data.convert.verasonics module zea.data.data_format module zea.data.dataloader module

zea.data.datasets module zea.data.file module zea.data.file_operations module zea.data.layers module zea.data.preset_utils module zea.data.utils module zea.datapaths module zea.display module zea.doppler module zea.func module zea.interface module zea.io_lib module zea.log module zea.metrics module zea.models module zea.models.base module zea.models.carotid_segmenter module zea.models.deeplabv3 module zea.models.dense module zea.models.diffusion module zea.models.echonet module zea.models.echonetlvh module zea.models.generative module zea.models.gmm module zea.models.hvae module zea.models.layers module zea.models.lpips module zea.models.lv_segmentation module zea.models.preset_utils module zea.models.presets module zea.models.regional_quality module zea.models.taesd module zea.models.unet module zea.models.utils module zea.ops module zea.ops.keras_ops module zea.probes module zea.scan module zea.simulator module zea.tools module zea.tools.fit_scan_cone module zea.tools.hf module zea.tools.selection_tool module zea.tools.wndb module zea.tracking module zea.utils module zea.visualize module ZeaJSONEncoder (class in zea.data.utils) ZerosLike (class in zea.ops.keras_ops) zlims (zea.scan.Scan property)